CDS

Accession Number TCMCG075C26243
gbkey CDS
Protein Id XP_007013310.1
Location complement(join(6339430..6339510,6339976..6340044,6340142..6340207,6340290..6340358,6340642..6340695,6340777..6340840,6341229..6341665,6341764..6341862,6342302..6342412))
Gene LOC18588679
GeneID 18588679
Organism Theobroma cacao

Protein

Length 349aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA341501
db_source XM_007013248.2
Definition PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Theobroma cacao]

EGGNOG-MAPPER Annotation

COG_category A
Description Zinc finger CCCH domain-containing protein
KEGG_TC -
KEGG_Module M00351        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K11093        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0001655        [VIEW IN EMBL-EBI]
GO:0001822        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003730        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006928        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007369        [VIEW IN EMBL-EBI]
GO:0007399        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009409        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009792        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009895        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0016477        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0022008        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0031330        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032270        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034250        [VIEW IN EMBL-EBI]
GO:0040011        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043487        [VIEW IN EMBL-EBI]
GO:0043488        [VIEW IN EMBL-EBI]
GO:0043489        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045727        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0048255        [VIEW IN EMBL-EBI]
GO:0048513        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048598        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048793        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0048870        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051247        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051674        [VIEW IN EMBL-EBI]
GO:0060211        [VIEW IN EMBL-EBI]
GO:0060212        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061013        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0072001        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1900151        [VIEW IN EMBL-EBI]
GO:1900152        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902369        [VIEW IN EMBL-EBI]
GO:1902373        [VIEW IN EMBL-EBI]
GO:1903311        [VIEW IN EMBL-EBI]
GO:1903312        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACGATCGACGACGACAGTTCGGTATACGTGGGAGGACTCCCCTACGACGCCACAGAAGCCTCTATCCGCCGTGTTTTCAGCCTATACGGCGCCGTCGTCGCCGTGAAGATTGTTAATGATCATACAACTAGAGGAAAATGCTATGGCTTTGTTACTTTTACAAATCCTCGTTCAGCTTATGATGCCATCAATGATATGAATGGCCGGACTATCGATGGTCGAGTTGTGAGAGTGAATGAAGTGACAACTAGAGGGGGCAGATTGAATTTCAATCGTGACCGCTCTCGACGGGGTGAGTGGGATAGGGGACGTGAGAGAGAAAGAGATCATGATCGTGATAGGGAACGGTATCGGGATCGATATAGTGATAGGTCCGAAGAGCATGATCAGTCTCGGGACCATGATGTTGGAAGAGGAAGAGGATACGAGCGTCATGATCATGATAGAGCCGGGGAATACTCATTGGATAGAGATCTTAACAGAGATGTGGAGGATAATGTGCGAGGAGAAAGCAGGGACCATATTCAGGATTGGGAGAGTCATGTGCTCAGTTTGGATCAGAATAGGGAGATTGATGGAAGTGGAACCAATGGTTATCATAGAAGTCTTGATGAGGACAAAGAGCAACAGTTGAGATGGAATGGCTCTATAAACAATGATCACCATAGCAGAGGGCTTTCATCAGATTCAAGTGATGATTACAATCAGATGAAAAATGAGCTTGAAGGATTGATTCAAAGTCGGGAAGAACTTAAACAAGAGATTTCGCTGATGGAAGGGAGGTTAGAAGAGAGACAAGAAATTGTTTTGGATTTACAGAAAAAATCTAAGACCTTGGAGGATTCATTAATTTCTGCAAAGAAGCTCTCTTCTCGGCGCAAAATGCAGTTAACCAAGCTGCATAAATGTTTCCTGCAAGTAAAGGAGTATAGGGAAAAACTTAAAAGCTGTGAACAAGAACTTCAGTCTCTTGTTGATTCAGCAATACTAGAGAGTGAAGATGATGTGGCTGTACGGGGTGGTACTTTGGCAAATGGCATTGCCTGA
Protein:  
MTIDDDSSVYVGGLPYDATEASIRRVFSLYGAVVAVKIVNDHTTRGKCYGFVTFTNPRSAYDAINDMNGRTIDGRVVRVNEVTTRGGRLNFNRDRSRRGEWDRGRERERDHDRDRERYRDRYSDRSEEHDQSRDHDVGRGRGYERHDHDRAGEYSLDRDLNRDVEDNVRGESRDHIQDWESHVLSLDQNREIDGSGTNGYHRSLDEDKEQQLRWNGSINNDHHSRGLSSDSSDDYNQMKNELEGLIQSREELKQEISLMEGRLEERQEIVLDLQKKSKTLEDSLISAKKLSSRRKMQLTKLHKCFLQVKEYREKLKSCEQELQSLVDSAILESEDDVAVRGGTLANGIA